Tag Archives: Nisqually River

Winter chum salmon in South Puget Sound fail test for uniqueness

Sam Wright, who has been remarkably successful in getting various fish species protected under the Endangered Species Act, has learned that his latest ESA petition — possibly his final petition — has been rejected.

Sam, who retired from the Washington Department of Fish and Wildlife after years of studying salmon and other fish, would like to get special recognition for a unique population of chum salmon that return to South Puget Sound in the winter.

Nisqually River near Interstate 5 bridge
Photo: ©2006 Walter Siegmund/Wikimedia Commons

The Nisqually-Chambers Creek run of winter chum is the only population of chum salmon in the world that spawn as late as February, with some fish entirely missing the worst floods of December and January, Sam told me. His petition to the federal government was designed to get these winter chum recognized as a distinct population segment — much as the threatened summer chum population in Hood Canal has been designated as separate from the fall runs of chum throughout Puget Sound.

Being a small population, the Nisqually-Chambers Creek winter chum would probably qualify for threatened or endangered status, he said, but first it would need to be recognized as distinct. If not listed initially as threatened or endangered, those decisions could follow if the population crashes, he said.

“The petition was meant to correct what was, from my perspective, a mistake made 20 years ago when they made a coastwise series of reports assessing the chum salmon populations,” said Sam, who is now 81 years old.

“In the entire range of chum salmon — both in North America and Asia — there are 3,500 streams with chum salmon,” he continued, “but there is only one single winter-run chum salmon, and that is the Nisqually.”

Sam’s petition (PDF 4.2 mb), filed more than two years ago, was subject to a 90-day review by the National Marine Fisheries Service, also known as NOAA Fisheries. Sam was told that the petition had been misplaced all this time. Last week, he got the news that the Nisqually-Chambers Creek winter chum would not be recognized as a distinct population, nor would it be considered for further review without new information being brought forward.

In rejecting Sam’s petition, NOAA’s Northwest Fisheries Science Center reviewed available data — including a 2015 genetic study on chum populations — and concluded that the original analysis done in 1997 was still valid. That analysis concluded that the winter-run chum are closely related to the fall-run chum in Puget Sound and Hood Canal and that “there is no clear genetic evidence to support the idea that the winter-run chum salmon in Puget Sound are substantially reproductively isolated from other chum salmon populations in southern Puget Sound.” See “Listing Endangered or Threatened Species …”

Sam argues that the winter chum remain genetically isolated from fall chum populations because of their unusual spawning schedule. That is demonstrated by annual population counts, which go up and down independently of fall chum numbers in South Puget Sound.

“They are reacting to different environmental conditions,” Sam explained.

Studies are needed to show the differences, Sam said, but they may have an advantage over fall chum by avoiding most of the winter floods, which can displace salmon eggs incubating in the gravel or else smother them in silt.

Incubation time is based on temperature, so the late-arriving chum are subject to warmer water and faster incubation. The winter chum fry are only a little behind the fall chum fry, Sam said.

One of the most productive areas for winter chum is Muck Creek, a tributary of the Nisqually River that runs through Joint Base Lewis McCord, where the Army conducts military exercises, according to Sam.

“We’ve had decades of battles with Fort Lewis over whether to use Muck Creek as part of their firing range,” Sam told me, adding that he suspects that pressure from the military played a role in NOAA’s original decision to lump the winter chum together with the fall chum.

Personally, I don’t know anything about such conflicts, but Muck Creek has been the site of a major restoration effort involving JBLM, the Nisqually Tribe and other groups. In 2011, reporter Ingrid Barrentine wrote about the annual salmon homecoming for Northwest Guardian, a JBLM publication.

As for the habitat in Muck Creek, Sam told me something else that was surprising. The stream is spring-fed with freshwater bubbling up from below and providing stable flows, he said. That helps the eggs to survive. Unlike many streams in which only 10 percent of the chum eggs grow into fry headed for saltwater, Muck Creek has had a 90-percent survival rate.

One reason that Sam is so concerned about the Nisqually-Chambers Creek winter chum is the uncertainty about what is coming in the future. Climate change is likely to bring higher stream flows in winter, he said, and chum runs that come later may hold the keys to survival of the species.

“To me, the last thing we want to do is throw away that particular piece,” Sam said, paraphrasing Aldo Leopold, whose exact quote is this:

“If the biota, in the course of aeons, has built something we like but do not understand, then who but a fool would discard seemingly useless parts? To keep every cog and wheel is the first precaution of intelligent tinkering.” (Round River)

Sam Wright’s persistence has paid off in the past when he has asked for reconsideration and finally received threatened or endangered status for various populations of salmon, steelhead, rockfish and other marine species. This time, he may or may not provide additional information and ask the agency to reconsider its position. In any case, Sam told me that he has no new petitions in the works, and this may be his last effort.

Whether Nisqually-Chambers Creek winter chum — or any salmon population — is considered distinct rests on NOAA’s definition of species, 16 U.S.C. 1531, which includes two criteria:

  1. The population must be substantially reproductively isolated from other nonspecific population units; and
  2. The population must represent an important component in the evolutionary legacy of the species.

In turning down Sam’s petition, reviewers pointed to genetic studies that supported the finding that summer chum in Hood Canal and the Strait of Juan de Fuca were distinct from other chum runs. A second grouping included the remaining fall, summer and winter runs in Puget Sound, with a third grouping of fall chum from the Strait of Juan de Fuca, the Washington Coast and Oregon.

The reviewers also pointed out that the Nisqually River and Chambers Creek to the north are not geographically isolated from the rest of South Puget Sound.

As for “evolutionary legacy,” Sam contends that loss of the winter chum would be forever, as with extinct summer chum in many river systems including Chambers Creek. That critical issue, he said, is the very definition of legacy.

The reviewers of his petition found, like the 1997 review team, that winter and summer runs in Puget Sound only showed “patterns of diversity within a relatively large and complex evolutionarily significant unit,” known as an ESU.

“Both the Nisqually River and Chambers Creek watersheds have supported both summer- and fall-run chum salmon in the past, along with winter-run chum salmon,” concluded the agency’s written findings, “so there is nothing unique preventing these watersheds from supporting multiple chum salmon runs.”

Finding answers for dangerous decline of Puget Sound steelhead

Harbor seals have become prime suspects in the deaths of millions of young steelhead trout that die each year in Puget Sound, but the seals may not be working alone.

Trends

Disease and/or various environmental factors could play a part, perhaps weakening the young steelhead as they begin their migratory journey from the streams of Puget Sound out to the open ocean. Something similar is happening to steelhead on the Canadian side of the border in the Salish Sea.

More than 50 research projects are underway in Puget Sound and Georgia Strait to figure out why salmon runs are declining — and steelhead are a major focus of the effort. Unlike most migratory salmon, steelhead don’t hang around long in estuaries that can complicate the mortality investigation for some species.

The steelhead initiative was launched by the Washington Department of Fish and Wildlife and Puget Sound Partnership with funding from the Legislature. The steelhead work is part of the Salish Sea Marine Survival Project, which is halfway through its five-year term, according to Michael Schmidt of Long Live the Kings, which coordinates the effort in the U.S. The larger project involves at least 60 organizations, including state and federal agencies, Indian tribes and universities.

A new report on research findings for steelhead (PDF 9.8 mb) describes the most significant results to date for our official state fish, which was listed as “threatened” in 2007. While steelhead populations on the Washington Coast and Columbia River have rebounded somewhat since their lowest numbers in the 1980s, steelhead in the Salish Sea remain at historical lows — perhaps 10 percent of their previous average.

“Because steelhead are bigger and move fast through the system, they are easier to study (than other salmon species),” Michael told me. “It has been a lot easier to feel confident about what you are finding.”

Abundance

Steelhead can be imbedded with tiny acoustic transmitters, which allow them to be tracked by acoustic receivers along their migration routes to the ocean. It appears that the tagged fish survive their freshwater journey fairly well, but many soon disappear once they reach Puget Sound. The longer they travel, the more likely they are to perish before they leave the sound.

While steelhead are susceptible to being eaten by a few species of birds, their primary predators appear to be harbor seals. These findings are supported by a new study that placed acoustic receivers on seals and observed that some of the transmitters embedded in steelhead ended up where the seals hang out, suggesting that the fish were probably eaten.

In a different kind of tagging study, Canadian researchers placed smaller passive integrated transponder (PIT) tags in a large number of coho salmon and attached devices to read the PIT tags on coho salmon.

“What is most interesting to date,” states a new report from the Pacific Salmon Foundation,“ (PDF 4 mb), “is that we only have confirmed feeding on tagged coho salmon by four of the 20 seals equipped with receivers. This suggests that feeding on juvenile salmon may be an opportunistic behavior acquired by a limited number of seals.”

New studies are underway to confirm steelhead predation by looking at fecal samples from seals in South Puget Sound. Researchers hope to figure out what the seals are eating and estimate steelhead consumption.

As I mentioned at the outset of this blog post, it may be more than a simple case of seals eating steelhead. For one thing, seal populations may have increased while their other food choices have decreased. Would the seals be eating as many steelhead if Puget Sound herring populations were close to their historical averages?

Other factors may be making young steelhead vulnerable to predation. A leading candidate is a parasite called Nanophyetus salmincola, which can infest steelhead and perhaps increase their risk of predation. The parasite’s life cycle requires a snail and a warm-blooded animal, as I described in a story I wrote for the Encyclopedia of Puget Sound — part of a larger piece about disease as a powerful ecological force. Anyway, the snail is found only in streams in South Puget Sound, which might help explain why steelhead deaths are higher among these South Sound populations.

Experiments are underway to compare the survival of two groups of identical steelhead, one group infested with Nanophyetus and one not.

Depending on funding and proper design, another experiment could test whether treating a stream to temporarily eliminate the snail — an intermediate host — could increase the survival of steelhead. If successful, treating streams to remove these snails could be one way of helping the steelhead. For these and other approved and proposed studies, check out the Marine Survival Project’s “2015-2017 Research Work Plan” (PDF 9.3 mb).

Other factors under review that could play a role in steelhead survival are warming temperatures and pollution in Puget Sound, which could help determine the amount and type of plankton available for steelhead and salmon. Could a shift in plankton result in less food for the small fish? It’s a major question to be answered.

I’ve mentioned in Water Ways (3/15/2010) that transient killer whales, which eat seals, sea lions and harbor porpoises, may be helping their distant cousins, the Southern Resident killer whales, which eat fish. Those smaller marine mammals compete for the adult salmon eaten by the Southern Residents. By clearing out some of those competitors, the transients could be leaving more salmon for the Southern Residents.

It may be too early to draw any firm conclusions, Michael Schmidt told me, but transient killer whales may be helping steelhead as well. Last year, when transients ventured into South Puget Sound and stayed longer than usual, the survival rate for steelhead from the nearby Nisqually River was the highest it has been in a long time.

Were the whales eating enough seals to make a difference for steelhead, or were the seals hiding out and not eating while the whales were around. Whether there were benefits for the steelhead, we could be seeing what happens when a major predator (orcas) encounters an abundance of prey (seals).

Some wait for federal stimulus money to save habitat

State and local officials are waiting anxiously to learn who will get the federal stimulus money passing through the National Oceanic and Atmospheric Administration. The money will be targeted for habitat improvement.

I can’t find the national numbers, but I recall that NOAA had requests for maybe 10 times the money it had available. That means there are going to be a few disappointed people and groups around the country.

Some people expected to hear an announcement of the results several weeks ago, but the Obama administration appears to be making a list and checking it twice — maybe trying to figure out which groups are naughty and nice.

Anyway, the Puget Sound Leadership Council moved ahead to award some state funds to make sure critical projects get under way this summer one way or another.

The Nisqually estuary restoration has been named a priority and will receive a good share of the money, but Hood Canal also remains a priority, with projects moving from the drawing board to construction on the water. Two Hood Canal estuary-restoration projects, totaling $2.7 million, are among five Puget Sound projects approved for state funding this week.

The Hood Canal projects are a $1.7 million restoration in the Skokomish River estuary and a $1 million restoration in the Little Quilcene estuary. The other three projects, totaling $1.6 million, are associated with the Nisqually River restoration project.

Check out the press release from the Puget Sound Partnership. Here’s the brief story I prepared for Saturday’s Kitsap Sun:
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